scReadSim – a single-cell RNA-seq and ATAC-seq read simulator
Benchmarking single-cell RNA-seq (scRNA-seq) and single-cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) computational tools…
Browsing: Quality Control
The Dex-Benchmark resource – datasets and code to evaluate algorithms for transcriptomics data analysis
Many tools and algorithms are available for analyzing transcriptomics data. These include algorithms for performing…
RNA Strain-Match – a tool for matching single-nucleus, single-cell, or bulk RNA-sequencing alignment data to its corresponding genotype
When next generation sequencing is performed in large batches, there are several stages at which…
SoCube – an innovative end-to-end doublet detection algorithm for analyzing scRNA-seq data
Doublets formed during single-cell RNA sequencing (scRNA-seq) severely affect downstream studies, such as differentially expressed…
SAMStat 2 – quality control for next generation sequencing data
SAMStat is an efficient program to extract quality control metrics from fastq and SAM/BAM files.…
COPILOT – fast scRNA-seq raw data processing using scKB and non-arbitrary quality control
Researchers from Humboldt Universität zu Berlin describe a protocol to perform fast and non-arbitrary quality…
popsicleR – an R package for pre-processing and quality control analysis of single cell RNA-seq data
The advent of single-cell sequencing is providing unprecedented opportunities to disentangle tissue complexity and investigate…