Digital RNA sequencing using unique molecular identifiers enables ultrasensitive RNA mutation analysis
Understanding genetic mutations is crucial for various applications, from diagnosing diseases to unraveling the complexities…
Browsing: Other Tools
KinPred-RNA – kinase activity inference and cancer type classification using machine learning on RNA-seq data
Kinases play a pivotal role in regulating various cellular processes by transferring phosphate groups from…
TFvelo – gene regulation inspired RNA velocity estimation
Understanding the dynamics of gene expression within single cells is crucial for deciphering cell fate…
Unraveling genomic mysteries: Sniffles2 and the quest for accurate structural variant calling
In the intricate landscape of genomics, uncovering structural variations (SVs) within the genome is akin…
PERFUMES – pipeline to extract RNA FUnctional motifs and exposed structures
Up to 75% of the human genome encodes RNAs. The function of many non-coding RNAs…
scDisInFact – disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data
Single-cell RNA-sequencing (scRNA-seq) has been widely used for disease studies, where sample batches are collected…
NanOlympicsMod – benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
N6-methyladenosine (m6A) is the most abundant internal eukaryotic mRNA modification, and is involved in the…
SURGE – uncovering context-specific genetic-regulation of gene expression from single-cell RNA sequencing using latent-factor models
Genetic regulation of gene expression is a complex process, with genetic effects known to vary…
FindAdapt – A python package for fast and accurate adapter detection in small RNA sequencing
Adapter trimming is an essential step for analyzing small RNA sequencing data, where reads are…
SinCMat – A single-cell-based method for predicting functional maturation transcription factors
A major goal of regenerative medicine is to generate tissue-specific mature and functional cells. However,…