scDown – a pipeline for single-cell RNA-seq downstream analysis
A research team led by researchers at Boston Children’s Hospital has developed a powerful new…
Browsing: Analysis Pipelines
scExtract: leveraging large language models for fully automated single-cell RNA-seq data annotation and prior-informed multi-dataset integration
Single-cell RNA sequencing (scRNA-seq) is a powerful tool for understanding the diversity of cells in…
Perturb-Multimodal – a platform for pooled genetic screens with imaging and sequencing in intact mammalian tissue
Scientists at the Howard Hughes Medical Institute have created a powerful new tool called Perturb-Multimodal,…
CADRES – precise detection of differential RNA editing sites across varied biological conditions
RNA editing is a crucial process that allows cells to make changes to RNA molecules…
OmiCLIP – a visual–omics foundation model to bridge histopathology with spatial transcriptomics
Researchers are constantly looking for better ways to understand how genes function in the context…
Immunopipe – a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline
Understanding the human immune system at a cellular level has become increasingly important in fields…
scRDEN – single-cell dynamic gene rank differential expression network and robust trajectory inference
Understanding how a single cell matures and takes on a specific role in the body…
Replicability of bulk RNA-Seq differential expression and enrichment analysis results for small cohort sizes
Researchers at the University of Bern explored a common issue in RNA sequencing (RNA-Seq) research—how…
miRglmm – a generalized linear mixed model of isomiR-level counts
MicroRNAs (miRNAs) are small but powerful molecules that play a crucial role in regulating gene…
MammOnc-DB – an integrative breast cancer data analysis platform for target discovery
Breast cancer is not just one disease—it’s a collection of different types with varying molecular…