ASGARD – A Single-cell Guided Pipeline to Aid Repurposing of Drugs
Single-cell RNA sequencing technology has enabled in-depth analysis of intercellular heterogeneity in various diseases. However,…
Browsing: Workflows
Strategies for integrating single-cell RNA sequencing results with multiple species
Single-cell RNA sequencing (scRNAseq) is a robust technology for parsing gene expression in individual cells…
Single-cell transcriptome sequencing allows genetic separation, characterization and identification of individuals in multi-person biological mixtures
Identifying individuals from biological mixtures to which they contributed is highly relevant in crime scene…
INVADEseq – invasion adhesion directed expression sequencing
Dr. Jorge Galeano Niño, a postdoctoral fellow in Dr. Susan Bullman’s Lab, confesses that he did…
A computational workflow for analysis of 3′ Tag-Seq data
RNA-sequencing (RNA-seq) is a gold-standard method to profile genome-wide changes in gene expression. RNA-seq uses…
A novel method for for cell fixation before dissociation and single-cell sequencing
Single-cell RNA-sequencing (scRNA-seq) presents an opportunity to deconstruct cellular networks but is limited by the…
Transcriptome profiling for precision cancer medicine using shallow nanopore cDNA sequencing
Transcriptome profiling is a mainstay of translational cancer research and is increasingly finding its way…
High-throughput droplet-based analysis of influenza A virus genetic reassortment by single-virus RNA sequencing
The segmented RNA genome of influenza A viruses (IAVs) enables viral evolution through genetic reassortment…
MATQ_Drop – Multiple-Annealing-and-Tailing-based Quantitative scRNA-seq in Droplets
Synapses are crucial structures that mediate signal transmission between neurons in complex neural circuits and…
scRNAseq_KNIME workflow – a customizable, locally executable, interactive and automated KNIME workflow for single-cell RNA seq
Single-cell RNA sequencing (scRNA-seq) is nowadays widely used to measure gene expression in individual cells,…