Unraveling the timeline of gene expression – a pseudotemporal trajectory analysis of single-cell RNA sequencing data
Single-cell RNA sequencing (scRNA-seq) technologies have rapidly developed in recent years. The droplet-based single cell…
Browsing: Publications
INVADEseq – cataloging bacterial diversity within tumor samples
It is said in Spanish, “si no existe, créalo” or “if it does not exist,…
RNA sequencing identifies genetic effects of traumatic brain injury using an artificial brain
The severity of traumatic brain injury (TBI) has been underscored in the last decade as…
Researchers develop new method to identify and remove background noise from single cell data
CITE-seq (cellular indexing of transcriptomes and epitopes) is an RNA sequencing-based method that simultaneously quantifies…
scReadSim – a single-cell RNA-seq and ATAC-seq read simulator
Benchmarking single-cell RNA-seq (scRNA-seq) and single-cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) computational tools…
A longitudinal single-cell atlas of treatment response in pediatric AML
Pediatric acute myeloid leukemia (pAML) is characterized by heterogeneous cellular composition, driver alterations and prognosis.…
UC Irvine researchers discover how to better support lab grown muscle cells after transplantation
Lab-grown skeletal muscle cells transplanted into mice with a muscular dystrophy for 90 days are…
Combined RNA sequencing and artificial intelligence predicts changes in gene expression as cells interact
The cells that make up our bodies are constantly communicating with each other, sometimes directly…
Single-cell analysis reveals distinct fibroblast plasticity during tenocyte regeneration in zebrafish
Despite their importance in tissue maintenance and repair, fibroblast diversity and plasticity remain poorly understood.…
RiboSplitter – prediction of alternative pre-mRNA splicing outcomes
To understand the biological impact of alternative pre-mRNA splicing, it is vital to know which…