scReadSim – a single-cell RNA-seq and ATAC-seq read simulator
Benchmarking single-cell RNA-seq (scRNA-seq) and single-cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) computational tools…
Browsing: Publications
A longitudinal single-cell atlas of treatment response in pediatric AML
Pediatric acute myeloid leukemia (pAML) is characterized by heterogeneous cellular composition, driver alterations and prognosis.…
UC Irvine researchers discover how to better support lab grown muscle cells after transplantation
Lab-grown skeletal muscle cells transplanted into mice with a muscular dystrophy for 90 days are…
Combined RNA sequencing and artificial intelligence predicts changes in gene expression as cells interact
The cells that make up our bodies are constantly communicating with each other, sometimes directly…
Single-cell analysis reveals distinct fibroblast plasticity during tenocyte regeneration in zebrafish
Despite their importance in tissue maintenance and repair, fibroblast diversity and plasticity remain poorly understood.…
RiboSplitter – prediction of alternative pre-mRNA splicing outcomes
To understand the biological impact of alternative pre-mRNA splicing, it is vital to know which…
standR – spatial transcriptomic analysis for GeoMx DSP data
To gain a better understanding of the complexity of gene expression in normal and diseased…
TEMPO approach integrates microvolume liquid-biopsy proteomics, single-cell transcriptomics, and artificial intelligence
Stanford’s Mahajan Lab’s new artificial intelligence (AI) driven eye “aging clock” has revealed that diseased…
scTensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data
Complex biological systems are described as a multitude of cell-cell interactions (CCIs). Recent single-cell RNA-sequencing…
dSort-Seq – deep-learning–assisted high-throughput profiling of gene expression characteristics with high precision
Owing to the nondeterministic and nonlinear nature of gene expression, the steady-state intracellular protein abundance…