PSCSR-seq – parallel single-cell small RNA sequencing
miRNA and other forms of small RNAs are known to regulate many biological processes. Single-cell…
Browsing: Publications
scSELpy – manual cell selection in single cell transcriptomics for analysis of immune cell subsets
Single cell RNA sequencing plays an increasing and indispensable role in immunological research such as…
dd-scCNV Seq – digital microfluidics-based digital counting of single-cell copy number variation
Single-cell copy number variations (CNVs), major dynamic changes in humans, result in differential levels of…
cellsnake – a user-friendly tool for single cell RNA sequencing analysis
Single-cell RNA sequencing (scRNA-seq) provides high-resolution transcriptome data to understand the heterogeneity of cell populations…
kimma – flexible linear mixed effects modeling with kinship covariance for RNA-seq data
The identification of differentially expressed genes (DEGs) from transcriptomic datasets is a major avenue of…
scEC&T-seq – parallel sequencing of extrachromosomal circular DNAs and transcriptomes in single cancer cells
Extrachromosomal DNAs (ecDNAs) are common in cancer, but many questions about their origin, structural dynamics…
Colon cancer microbiome reconstruction from human RNA sequencing data
The association between microbes and cancer has been reported repeatedly; however, it is not clear…
Researchers use RATESeq to measure the rate of both transcription and breakdown of RNA molecules in human disease
Every cell in our body is able to turn genes (DNA) on or off, producing…
Systematic evaluation of the two main blood-based RNA-seq approaches for Mendelian disease diagnosis
As an adjunct to diagnostic exome sequencing and whole-genome sequencing, RNA sequencing (RNA-seq) has been…
Nano-DMS-MaP – isoform-specific RNA structure determination
Genome-wide measurements of RNA structure can be obtained using reagents that react with unpaired bases,…