Scientists develop AI-based method to predict RNA modifications
The new method enables faster and easier reading of RNA modifications which can be applied…
Browsing: Other Tools
GeneClust – a cofunctional grouping-based approach for non-redundant feature gene selection in unannotated single-cell RNA-seq analysis
Feature gene selection has significant impact on the performance of cell clustering in single-cell RNA…
Ribo-uORF – a comprehensive data resource of upstream open reading frames (uORFs) based on ribosome profiling
Upstream open reading frames (uORFs) are typically defined as translation sites located within the 5′…
Phasik – inferring cell cycle phases from a partially temporal network of protein interactions
The temporal organization of biological systems is key for understanding them, but current methods for…
INTERSTELLAR – A universal sequencing read interpreter
Massively parallel DNA sequencing has led to the rapid growth of highly multiplexed experiments in…
CaRPool-seq – combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq
Pooled CRISPR screens coupled with single-cell RNA-sequencing have enabled systematic interrogation of gene function and…
A lineage tree-based hidden Markov model quantifies cellular heterogeneity and plasticity
Individual cells can assume a variety of molecular and phenotypic states and recent studies indicate…
LAPA – analysis of alternative polyadenylation from long-read or short-read RNA-seq
Alternative polyadenylation (APA) is a major mechanism that increases transcriptional diversity and regulates mRNA abundance.…
miRPipe – a unified computational framework for a robust, reliable, and reproducible identification of novel miRNAs from RNA sequencing data
In eukaryotic cells, miRNAs regulate a plethora of cellular functionalities ranging from cellular metabolisms, and…
Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells
Sophisticated methods to properly pre-process and analyze the increasing collection of single-cell RNA sequencing (scRNA-seq)…