CloneTracer – clonally resolved single-cell multi-omics
Researchers have developed a new method to distinguish between cancerous and healthy stem cells and…
Browsing: Other Tools
Read2Tree – inference of phylogenetic trees directly from raw sequencing reads
Current methods for inference of phylogenetic trees require running complex pipelines at substantial computational and…
Gene filtering strategies for machine learning guided biomarker discovery using neonatal sepsis RNA-seq data
Machine learning (ML) algorithms are powerful tools that are increasingly being used for sepsis biomarker…
PUREE – accurate pan-cancer tumor purity estimation from gene expression data
Tumors are complex masses composed of malignant and non-malignant cells. Variation in tumor purity (proportion…
Applying a GAN-based classifier to improve transcriptome-based prognostication in breast cancer
Established prognostic tests based on limited numbers of transcripts can identify high-risk breast cancer patients…
scMSGL – kernelized multiview signed graph learning for single-cell RNA sequencing data
Characterizing the topology of gene regulatory networks (GRNs) is a fundamental problem in systems biology.…
cellDancer – a scalable deep neural network that locally infers velocity for each cell from its neighbors
RNA velocity provides an approach for inferring cellular state transitions from single-cell RNA sequencing (scRNA-seq)…
ElasticBLAST – accelerating sequence search via cloud computing
Biomedical researchers use alignments produced by BLAST (Basic Local Alignment Search Tool) to categorize their…
SoCube – an innovative end-to-end doublet detection algorithm for analyzing scRNA-seq data
Doublets formed during single-cell RNA sequencing (scRNA-seq) severely affect downstream studies, such as differentially expressed…
scPrisma – inference of topological signals in single-cell data using spectral template matching
Single-cell RNA sequencing has been instrumental in uncovering cellular spatiotemporal context. This task is challenging…