PUREE – accurate pan-cancer tumor purity estimation from gene expression data
Tumors are complex masses composed of malignant and non-malignant cells. Variation in tumor purity (proportion…
Browsing: Other Tools
Applying a GAN-based classifier to improve transcriptome-based prognostication in breast cancer
Established prognostic tests based on limited numbers of transcripts can identify high-risk breast cancer patients…
scMSGL – kernelized multiview signed graph learning for single-cell RNA sequencing data
Characterizing the topology of gene regulatory networks (GRNs) is a fundamental problem in systems biology.…
cellDancer – a scalable deep neural network that locally infers velocity for each cell from its neighbors
RNA velocity provides an approach for inferring cellular state transitions from single-cell RNA sequencing (scRNA-seq)…
ElasticBLAST – accelerating sequence search via cloud computing
Biomedical researchers use alignments produced by BLAST (Basic Local Alignment Search Tool) to categorize their…
SoCube – an innovative end-to-end doublet detection algorithm for analyzing scRNA-seq data
Doublets formed during single-cell RNA sequencing (scRNA-seq) severely affect downstream studies, such as differentially expressed…
scPrisma – inference of topological signals in single-cell data using spectral template matching
Single-cell RNA sequencing has been instrumental in uncovering cellular spatiotemporal context. This task is challenging…
DeepMAPS – biological network inference from scMulti-omics
Single-cell multi-omics (scMulti-omics) allows the quantification of multiple modalities simultaneously to capture the intricacy of…
scTEP – single-cell data Trajectory inference method using Ensemble Pseudotime inference
The advance in single-cell RNA sequencing technology has enhanced the analysis of cell development by…
vAMPirus – a versatile amplicon processing and analysis program for studying viruses
Amplicon sequencing is an effective and increasingly applied method for studying viral communities in the…