Pathway Analysis with OmicsBox: Analyzing a Salamander Limb Regeneration Transcriptomics Dataset
The functional interpretation of differentially expressed genes obtained from RNA-seq data is a critical step…
Browsing: Analysis Pipelines
scSemiAAE – a semi-supervised clustering model for single-cell RNA-seq data
Single-cell RNA sequencing (scRNA-seq) strives to capture cellular diversity with higher resolution than bulk RNA…
scMEB – a fast and clustering-independent method for detecting differentially expressed genes in single-cell RNA-seq data
Cell clustering is a prerequisite for identifying differentially expressed genes (DEGs) in single-cell RNA sequencing…
ExpressAnalyst – a unified platform for RNA-sequencing analysis in non-model species
The increasing application of RNA sequencing to study non-model species demands easy-to-use and efficient bioinformatics…
gExcite – a start-to-end framework for single-cell gene expression, hashing, and antibody analysis
Recently, CITE-seq emerged as a multimodal single-cell technology capturing gene expression and surface protein information…
RNAincoder – a deep learning-based encoder for RNA and RNA-associated interaction
Ribonucleic acids (RNAs) involve in various physiological/pathological processes by interacting with proteins, compounds, and other…
New computational tool identifies novel targets for cancer immunotherapy from RNA sequencing data
Researchers at Children’s Hospital of Philadelphia (CHOP) and the University of California, Los Angeles (UCLA)…
scSELpy – manual cell selection in single cell transcriptomics for analysis of immune cell subsets
Single cell RNA sequencing plays an increasing and indispensable role in immunological research such as…
cellsnake – a user-friendly tool for single cell RNA sequencing analysis
Single-cell RNA sequencing (scRNA-seq) provides high-resolution transcriptome data to understand the heterogeneity of cell populations…
GuiltyTargets-COVID-19 – a machine learning method for the identification and characterization of novel COVID-19 drug targets from bulk and scRNA-Seq data
In addition to vaccines, the World Health Organization sees novel medications as an urgent matter…