gExcite – a start-to-end framework for single-cell gene expression, hashing, and antibody analysis
Recently, CITE-seq emerged as a multimodal single-cell technology capturing gene expression and surface protein information…
Browsing: Analysis Pipelines
RNAincoder – a deep learning-based encoder for RNA and RNA-associated interaction
Ribonucleic acids (RNAs) involve in various physiological/pathological processes by interacting with proteins, compounds, and other…
New computational tool identifies novel targets for cancer immunotherapy from RNA sequencing data
Researchers at Children’s Hospital of Philadelphia (CHOP) and the University of California, Los Angeles (UCLA)…
scSELpy – manual cell selection in single cell transcriptomics for analysis of immune cell subsets
Single cell RNA sequencing plays an increasing and indispensable role in immunological research such as…
cellsnake – a user-friendly tool for single cell RNA sequencing analysis
Single-cell RNA sequencing (scRNA-seq) provides high-resolution transcriptome data to understand the heterogeneity of cell populations…
GuiltyTargets-COVID-19 – a machine learning method for the identification and characterization of novel COVID-19 drug targets from bulk and scRNA-Seq data
In addition to vaccines, the World Health Organization sees novel medications as an urgent matter…
scSpace – reconstruction of the cell pseudo-space from single-cell RNA sequencing data
Tissues are highly complicated with spatial heterogeneity in gene expression. However, the cutting-edge single-cell RNA-seq…
CloneTracer – clonally resolved single-cell multi-omics
Researchers have developed a new method to distinguish between cancerous and healthy stem cells and…
BEERS2 – RNA-Seq simulation through high fidelity in silico modeling
Simulation of RNA-seq reads is critical in the assessment, comparison, benchmarking, and development of bioinformatics…
HaploCoV – unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2
Accurate and timely monitoring of the evolution of SARS-CoV-2 is crucial for identifying and tracking…