Aletsch – accurate assembly of multiple RNA-seq samples
High-throughput RNA sequencing (RNA-seq) has revolutionized our ability to decode the activities of genes within…
Browsing: Transcriptome Assembly Tools
GTax – improving de novo transcriptome assembly by removing foreign RNA contamination
The cost and complexity of generating a complete reference genome means that many organisms lack…
ORFanage – investigating open reading frames in known and novel transcripts
Researchers at the Johns Hopkins University have developed ORFanage, a system designed to assign open…
transXpress – a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
RNA-seq followed by de novo transcriptome assembly has been a transformative technique in biological research…
Merging short and stranded long reads improves transcript assembly
Long-read RNA sequencing has arisen as a counterpart to short-read sequencing, with the potential to…