DeconV – probabilistic cell type deconvolution from bulk rna-sequencing data
Bulk RNA-Seq remains a widely adopted technique to profile gene expression, primarily due to the…
Browsing: Cell Type Analysis
DISCERN – deep single-cell expression reconstruction for improved cell clustering and cell subtype and state detection
Single-cell sequencing provides detailed insights into biological processes including cell differentiation and identity. While providing…
sNucConv – a bulk RNA-seq deconvolution method trained on single-nucleus RNA-seq data to estimate cell-type composition
Deconvolution algorithms rely on single-cell RNA-sequencing (scRNA-seq) data applied onto bulk RNA-sequencing (bulk RNA-seq) to…
scBalance – a scalable sparse neural network framework for rare cell type annotation of single-cell transcriptome data
Automatic cell type annotation methods are increasingly used in single-cell RNA sequencing (scRNA-seq) analysis due…
scAnnotate – an automated cell type annotation tool for single-cell RNA-sequencing data
Single-cell RNA-sequencing (scRNA-seq) technology enables researchers to investigate a genome at the cellular level with…
SPICEMIX enables integrative single-cell spatial modeling of cell identity
Spatial transcriptomics can reveal spatially resolved gene expression of diverse cells in complex tissues. However,…
scMDR – learning cell annotation under multiple reference datasets by multisource domain adaptation
Accurate and efficient cell type annotation is essential for single-cell sequence analysis. Currently, cell type…
DLNLRR – non-negative low-rank representation based on dictionary learning for single-cell RNA-sequencing data analysis
In the analysis of single-cell RNA-sequencing (scRNA-seq) data, how to effectively and accurately identify cell…
sc-linker – identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetic
Genome-wide association studies provide a powerful means of identifying loci and genes contributing to disease,…
RNA-sensing system measures and controls protein expression in cells
A new technology called RADARS allows scientists to detect and target specific cell types, opening…