dsRID – in silico identification of dsRNA regions using long-read RNA-seq data
Double-stranded RNAs (dsRNAs) are potent triggers of innate immune responses upon recognition by cytosolic dsRNA…
Browsing: Annotation
CellSTAR – a comprehensive resource for single-cell transcriptomic annotation
Large-scale studies of single-cell sequencing and biological experiments have successfully revealed expression patterns that distinguish…
SCINPAS – single cell identification of novel PolyA sites
Alternative polyadenylation is a main driver of transcriptome diversity in mammals, generating transcript isoforms with…
GiRAFR – gRNA detection and annotation in single-cell CRISPR screens
Novel methods that combine single cell RNA-seq with CRISPR screens enable high-throughput characterization of transcriptional…
ORFanage – investigating open reading frames in known and novel transcripts
Researchers at the Johns Hopkins University have developed ORFanage, a system designed to assign open…
CapTrap-Seq – a platform-agnostic and quantitative approach for high-fidelity full-length RNA transcript sequencing
Long-read RNA sequencing is essential to produce accurate and exhaustive annotation of eukaryotic genomes. Despite…
scBalance – a scalable sparse neural network framework for rare cell type annotation of single-cell transcriptome data
Automatic cell type annotation methods are increasingly used in single-cell RNA sequencing (scRNA-seq) analysis due…
scAnno – a deconvolution strategy-based automatic cell type annotation tool for single-cell RNA-sequencing data sets
Undoubtedly, single-cell RNA sequencing (scRNA-seq) has changed the research landscape by providing insights into heterogeneous,…
transXpress – a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
RNA-seq followed by de novo transcriptome assembly has been a transformative technique in biological research…
scAnnotate – an automated cell type annotation tool for single-cell RNA-sequencing data
Single-cell RNA-sequencing (scRNA-seq) technology enables researchers to investigate a genome at the cellular level with…