scPair – Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlases
Multimodal single-cell assays are revolutionizing how we study biology by allowing researchers to analyze multiple…
Browsing: Analysis Pipelines
ELATUS – uncovering functional lncRNAs by scRNA-seq
Long non-coding RNAs, or lncRNAs, are an important part of our genetic code, but they…
SPoTLIghT – integrating histopathology and transcriptomics for spatial tumor microenvironment profiling
Cancer research is increasingly focused on understanding the tumor microenvironment (TME) — the community of…
scGraphformer – unveiling cellular heterogeneity and interactions in scRNA-seq data using a scalable graph transformer network
Single-cell RNA sequencing (scRNA-seq) has become a cornerstone tool in modern biology, allowing researchers to…
MST-m6A – a novel multi-scale transformer-based framework for prediction of m6A modification sites
In recent years, scientists have found that cells use small chemical “tags” on RNA molecules…
REDalign – accurate RNA structural alignment using residual encoder-decoder network
RNA molecules are essential for various biological processes, and studying them helps scientists understand how…
scHetG – Structure-preserved integration of scRNA-seq data using heterogeneous graph neural network
Single-cell RNA sequencing (scRNA-seq) is a powerful technique that allows scientists to study individual cells…
ZINBStein – shrinkage estimation of gene interaction networks in single-cell RNA sequencing data
Understanding how genes interact with one another is crucial for unraveling the complexities of biological…
GRUpred-m5U – a robust deep learning approach for identification of RNA 5-methyluridine sites
RNA molecules play crucial roles in various processes, including gene expression, protein synthesis, and cellular…
Memento – method of moments framework for differential expression analysis of single-cell RNA sequencing data
Single-cell RNA sequencing (scRNA-seq) is a powerful technique that allows scientists to study how genes…