rMATS-turbo – an efficient and flexible computational tool for alternative splicing analysis of large-scale RNA-seq data
The process of alternative splicing adds a layer of complexity to the way genetic information…
Browsing: Analysis Pipelines
CANAL – continually adapting pre-trained language model to universal annotation of single-cell RNA-seq data
Annotating cell types within single-cell RNA sequencing (scRNA-seq) datasets has posed a significant challenge, especially…
scEM – a new ensemble framework for predicting cell type composition based on scRNA-seq data
In recent years, single-cell RNA sequencing (scRNA-seq) technology has revolutionized our understanding of cellular composition…
STACAS – semi-supervised integration of single-cell transcriptomics data
Single-cell RNA sequencing (scRNA-seq) has revolutionized our understanding of cellular diversity and function. However, the…
TFvelo – gene regulation inspired RNA velocity estimation
Understanding the dynamics of gene expression within single cells is crucial for deciphering cell fate…
Unraveling genomic mysteries: Sniffles2 and the quest for accurate structural variant calling
In the intricate landscape of genomics, uncovering structural variations (SVs) within the genome is akin…
Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD
Advances in affordable transcriptome sequencing combined with better exon and gene prediction has motivated many…
PERFUMES – pipeline to extract RNA FUnctional motifs and exposed structures
Up to 75% of the human genome encodes RNAs. The function of many non-coding RNAs…
scDisInFact – disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data
Single-cell RNA-sequencing (scRNA-seq) has been widely used for disease studies, where sample batches are collected…
betAS – intuitive analysis and visualisation of differential alternative splicing using beta distributions
Next generation RNA sequencing allows alternative splicing (AS) quantification with unprecedented resolution, with the relative…