scANANSE – gene regulatory network and motif analysis of single-cell clusters
The recent development of single-cell techniques is essential to unravel complex biological systems. By measuring…
Browsing: Analysis Pipelines
Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data
Although an essential step, cell functional annotation often proves particularly challenging from single-cell transcriptional data.…
IBRAP – integrated benchmarking single-cell RNA-sequencing analytical pipeline
Single-cell ribonucleic acid (RNA)-sequencing (scRNA-seq) is a powerful tool to study cellular heterogeneity. The high…
DeepMAPS – biological network inference from scMulti-omics
Single-cell multi-omics (scMulti-omics) allows the quantification of multiple modalities simultaneously to capture the intricacy of…
A guide to gene-centric analysis using TreeSAPP
Gene-centric analysis is commonly used to chart the structure, function, and activity of microbial communities…
DeepBIO – automated and interpretable deep-learning platform for high-throughput biological sequence functional analysis.
Shandong University researchers have developed DeepBIO, the first-of-its-kind automated and interpretable deep-learning platform for high-throughput…
RNAlysis – analyze your RNA sequencing data without writing a single line of code
Amongst the major challenges in next-generation sequencing experiments are exploratory data analysis, interpreting trends, identifying…
vAMPirus – a versatile amplicon processing and analysis program for studying viruses
Amplicon sequencing is an effective and increasingly applied method for studying viral communities in the…
Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data
Effective dimension reduction is essential for single cell RNA-seq (scRNAseq) analysis. Principal component analysis (PCA)…
A new sequencing technique achieves high-quality results from small volumes of frozen tumor specimens archived in biobanks
Columbia researchers invent a technique to study cancer tissues archived in biobanks, increasing the number…