RNA-Seq-Pop – Exploiting the sequence in RNA-Seq – a Snakemake workflow
Researchers at the Liverpool School of Tropical Medicine have developed a reproducible and scalable Snakemake…
Browsing: Publications
PASTE – alignment and integration of spatial transcriptomics data
Spatial transcriptomics (ST) measures mRNA expression across thousands of spots from a tissue slice while…
Single-cell RNA sequencing reveals mechanism that causes both inflammation and immunosuppression in tumors
If cancerous cells started wreaking havoc in your body, like terrorists in a building, your…
Mount Sinai researchers discover genes that predict good response to blood cancer therapy
Patients whose multiple myeloma has three-gene signature are likely to benefit Mount Sinai researchers have…
Single-cell RNA sequencing reveals breast cancer biomarkers of response
Neoadjuvant chemotherapy (NAC) is the standard of care for many patients with breast cancer. Biomarkers of…
Single-cell atlas of drug treatments in a mouse model of diabetic kidney disease
Diabetic kidney disease (DKD) occurs in ∼40% of patients with diabetes and causes kidney failure,…
Researchers use scRNA-Seq for molecular profiling of differentiating human embryonic stem cells
Scientists at EPFL and the Karolinska Institute have tested and confirmed a protocol for growing…
An optimized protocol for single nuclei isolation from clinical biopsies for RNA-seq
Single nuclei RNA sequencing (snRNA-seq) has evolved as a powerful tool to study complex human…
Estimating tumor-specific total mRNA level from bulk RNA-seq predicts cancer outcomes
Study reports first mathematical approach to measure total tumor-specific mRNA from mixed tumor samples Researchers…
A rapid high-resolution HLA typing assay using RNA-Seq
HLA typing provides essential results for stem cell and solid organ transplants, as well as…