scMSGL – kernelized multiview signed graph learning for single-cell RNA sequencing data
Characterizing the topology of gene regulatory networks (GRNs) is a fundamental problem in systems biology.…
Browsing: Publications
cellDancer – a scalable deep neural network that locally infers velocity for each cell from its neighbors
RNA velocity provides an approach for inferring cellular state transitions from single-cell RNA sequencing (scRNA-seq)…
Can single-cell transcriptomics tell us if our brain is capable of repairing itself?
Is our brain able to regenerate? And can we harness this regenerative potential during aging…
ProBac-seq – probe-based bacterial single-cell RNA sequencing
Clonal bacterial populations rely on transcriptional variation across individual cells to produce specialized states that…
Artifacts and biases of the reverse transcription reaction in RNA-sequencing
RNA sequencing has spurred a great number of research areas in recent years. Most protocols…
The shaky foundations of simulating single-cell RNA sequencing data
With the emergence of hundreds of single-cell RNA-sequencing (scRNA-seq) datasets, the number of computational tools…
Zebrahub – a single-embryo single-cell RNA sequencing atlas of zebrafish development
Elucidating the developmental process of an organism will require the complete cartography of cellular lineages…
BEETLE ATLAS – a definitive, tissue-specific transcriptomic resource based on RNA-Seq data for the Tribolium community
More than half of all extant metazoan species on earth are insects. The evolutionary success…
ElasticBLAST – accelerating sequence search via cloud computing
Biomedical researchers use alignments produced by BLAST (Basic Local Alignment Search Tool) to categorize their…
Researchers have developed an instrument-free single-cell RNA sequencing using a reversible hydrogel for cell-specific barcoding
Researchers at Scipio Bioscience report progress in sample preparation for scRNA-seq based on RevGel-seq, a…