A new tool for plant long non-coding RNA identification
Long non-coding RNAs (lncRNAs) are ubiquitous transcripts with crucial regulatory roles in various biological processes,…
Browsing: Analysis Pipelines
scTPC – a novel semi-supervised deep clustering model for scRNA-seq data
Single-cell RNA sequencing (scRNA-seq) is a powerful tool, unlocking the secrets of cellular heterogeneity, trajectory…
scLENS – data-driven signal detection for unbiased scRNA-seq data analysis
Where the complexity of biological data meets the challenges of noise and high dimensionality, researchers…
The M2 pipeline – a novel tool for rapidly analyzing host metabolic profiles from rna-seq data
The innovative M2 pipeline strengthens the advanced metabolic modeling functionality of NIMML’s TITAN-X precision medicine platform…
DEBFold – computational identification of rna secondary structures for sequences across structural families using deep learning
RNA molecules are emerging as key players in cellular processes, going beyond their traditional role…
SifiNet – a robust and accurate method to identify feature gene sets and annotate cells
Understanding the distinct gene sets and subpopulations within heterogeneous cell populations is essential for unraveling…
SPADE – spatial deconvolution for domain specific cell-type estimation
In genomics, understanding how genes are expressed in different cell types within their spatial context…
mAFiA – detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data
Unraveling the mysteries of RNA has always been a challenging task, but recent advancements in…
TDEseq – temporal gene expression patterns from multi-sample multi-stage single-cell transcriptomics data
Understanding how genes behave over time is crucial for unlocking the secrets of development, disease…
Procrustes – a machine-learning approach that removes cross-platform batch effects from clinical RNA sequencing data
In personalized oncology, gene expression profiling has become increasingly vital for tailoring treatment strategies to…