CASi – a framework for cross-timepoint analysis of single-cell RNA sequencing data
Single-cell RNA sequencing (scRNA-seq) technology has emerged as a powerful tool, allowing scientists to peer…
Browsing: Analysis Pipelines
scBFP – single-cell RNA sequencing data imputation using bi-level feature propagation
Scientists have long grappled with the challenge of deciphering gene expression profiles at the single-cell…
scRANK – ranking of cell clusters in a single-cell RNA-sequencing analysis framework using prior knowledge
Prioritization or ranking of different cell types in a single-cell RNA sequencing (scRNA-seq) framework can…
rnaCrosslinkOO – an object-oriented R package for the analysis of RNA structural data generated by RNA crosslinking experiments
RNA molecules stand as pivotal players, orchestrating a myriad of essential functions such as gene…
A new tool for plant long non-coding RNA identification
Long non-coding RNAs (lncRNAs) are ubiquitous transcripts with crucial regulatory roles in various biological processes,…
scTPC – a novel semi-supervised deep clustering model for scRNA-seq data
Single-cell RNA sequencing (scRNA-seq) is a powerful tool, unlocking the secrets of cellular heterogeneity, trajectory…
scLENS – data-driven signal detection for unbiased scRNA-seq data analysis
Where the complexity of biological data meets the challenges of noise and high dimensionality, researchers…
The M2 pipeline – a novel tool for rapidly analyzing host metabolic profiles from rna-seq data
The innovative M2 pipeline strengthens the advanced metabolic modeling functionality of NIMML’s TITAN-X precision medicine platform…
DEBFold – computational identification of rna secondary structures for sequences across structural families using deep learning
RNA molecules are emerging as key players in cellular processes, going beyond their traditional role…
SifiNet – a robust and accurate method to identify feature gene sets and annotate cells
Understanding the distinct gene sets and subpopulations within heterogeneous cell populations is essential for unraveling…