RNA-MuTect-WMN – Estimating tumor mutational burden from RNA-sequencing without a matched-normal sample
Detection of somatic mutations using patients sequencing data has many clinical applications, including the identification…
Browsing: Analysis Pipelines
CLIPreg – Constructing translational regulatory networks from CLIP-, Ribo- and RNA-seq
The creation and analysis of gene regulatory networks have been the focus of bioinformatics research…
nf-rnaSeqCount – a Nextflow pipeline for obtaining raw read counts from RNA-seq data
The rate of raw sequence production through Next-Generation Sequencing (NGS) has been growing exponentially due…
FIRM – Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets
Single-cell RNA-sequencing (scRNA-seq) is being used extensively to measure the mRNA expression of individual cells…
ICARUS – an interactive web server for single cell RNA-seq analysis
Researchers from the University of Auckland have developed ICARUS, a web server to enable users…
IMGG – integrating multiple single-cell datasets through connected graphs and generative adversarial networks
There is a strong need to eliminate batch-specific differences when integrating single-cell RNA-sequencing (scRNA-seq) datasets…