ActiveSVM – single-cell mRNA-seq data analysis with a minimal number of genes
Sequencing costs currently prohibit the application of single-cell mRNA-seq to many biological and clinical analyses.…
Browsing: Analysis Pipelines
RNA-Seq-Pop – Exploiting the sequence in RNA-Seq – a Snakemake workflow
Researchers at the Liverpool School of Tropical Medicine have developed a reproducible and scalable Snakemake…
WAT3R – Recovery of T Cell Receptor Variable Regions From 3’ Single-Cell RNA-Sequencing
Diversity of the T cell receptor (TCR) repertoire is central to adaptive immunity. The TCR…
scAmpi – A versatile pipeline for single-cell RNA-seq analysis from basics to clinics
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful technique to decipher tissue composition at…
RNA-MuTect-WMN – Estimating tumor mutational burden from RNA-sequencing without a matched-normal sample
Detection of somatic mutations using patients sequencing data has many clinical applications, including the identification…
CLIPreg – Constructing translational regulatory networks from CLIP-, Ribo- and RNA-seq
The creation and analysis of gene regulatory networks have been the focus of bioinformatics research…
nf-rnaSeqCount – a Nextflow pipeline for obtaining raw read counts from RNA-seq data
The rate of raw sequence production through Next-Generation Sequencing (NGS) has been growing exponentially due…
FIRM – Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets
Single-cell RNA-sequencing (scRNA-seq) is being used extensively to measure the mRNA expression of individual cells…
ICARUS – an interactive web server for single cell RNA-seq analysis
Researchers from the University of Auckland have developed ICARUS, a web server to enable users…
IMGG – integrating multiple single-cell datasets through connected graphs and generative adversarial networks
There is a strong need to eliminate batch-specific differences when integrating single-cell RNA-sequencing (scRNA-seq) datasets…