SoloTE – improved analysis of transposable elements in single-cell RNA-Seq data using locus-specific expression
Transposable Elements (TEs) contribute to the repetitive fraction in almost every eukaryotic genome known to…
Browsing: Analysis Pipelines
PB_FLIP – PacBio Fusion and Long Isoform Pipeline for cancer transcriptome–based resolution of isoform complexity
Genomic profiling using short-read sequencing has utility in detecting disease-associated variation in both DNA and…
ShIVA – A user-friendly and interactive interface giving biologists control over their single-cell RNA-seq data
Single-cell technologies have revolutionised biological research and applications. As they continue to evolve with multi-omics…
scAllele – A versatile tool for the detection and analysis of variants in scRNA-seq
Single-cell RNA sequencing (scRNA-seq) data contain rich information at the gene, transcript, and nucleotide levels.…
iCOMIC – a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data
Despite the tremendous increase in omics data generated by modern sequencing technologies, their analysis can…
Cogito – automated and generic comparison of annotated genomic intervals
Genetic and epigenetic biological studies often combine different types of experiments and multiple conditions. While…
Pinc – a bioinformatic-assisted workflow for genome-wide identification of ncRNAs
With the upcoming of affordable Next-Generation Sequencing technologies, the number of known non-protein coding RNAs…
scGENA – a single-cell gene coexpression network analysis framework for clustering cell types and revealing biological mechanisms
Single-cell RNA-sequencing (scRNA-seq) is a recent high-throughput technique that can measure gene expression, reveal cell…
scraps – an end-to-end pipeline for measuring alternative polyadenylation at high resolution using single-cell RNA-seq
Alternative cleavage and polyadenylation (APA) contributes to the diversity of mRNA 3′ ends, affecting post-transcriptional…
aTAP – automated transcriptome analysis platform for processing RNA-seq data by de novo assembly
RNA-seq is a sequencing technique that uses next-generation sequencing (NGS) to explore and study the…