SiT – spatial isoform transcriptomics
In situ capturing technologies add tissue context to gene expression data, with the potential of…
Browsing: Spatial Transcriptomics
STRIDE – a topic-model-based method to deconvolve spatial transcriptomics using scRNA-seq
The recent advances in spatial transcriptomics have brought unprecedented opportunities to understand the cellular heterogeneity…
Spacemake – processing and analysis of large-scale spatial transcriptomics data
Spatial sequencing methods increasingly gain popularity within RNA biology studies. State-of-the-art techniques quantify messenger RNA…
PASTE – alignment and integration of spatial transcriptomics data
Spatial transcriptomics (ST) measures mRNA expression across thousands of spots from a tissue slice while…