Artificial spike-ins could improve accuracy of plant RNA-seq analysis
Researchers at NC State have published a simple trick that improves the accuracy of techniques…
Browsing: Publications
Chasing sequencing perfection: marching toward higher accuracy and lower costs
The advent of next-generation sequencing (NGS) technologies has revolutionized the way researchers study genetic information.…
SegPore – raw signal segmentation for estimating RNA modifications and structures from Nanopore direct RNA sequencing data
Estimating RNA modifications from Nanopore direct RNA sequencing data is an important task for the…
ScRAT – phenotype prediction from single-cell RNA-seq data using attention-based neural networks
Understanding the cellular basis of disease phenotypes is crucial for developing targeted therapies. Traditional bulk…
Unveiling reference bias in RNA-seq analysis: implications for complex polyploid genomes
RNA sequencing (RNA-seq) has revolutionized genomics by providing insights into gene expression patterns and regulatory…
CLIPPR – leveraging single-cell sequencing to classify and characterize tumor subgroups in bulk RNA sequencing data
Cancer is not a single disease but a diverse group of diseases characterized by distinct…
Enhancing the prognostic power in multiple myeloma using a plasma cell signature derived from single-cell RNA sequencing
Multiple myeloma (MM) is a complex and diverse form of cancer that affects plasma cells,…
HPV’s hidden hand – RNA sequencing and spatial transcriptomics reveal key details in head and neck cancer microenvironment
Using RNA sequencing and spatial transcriptomics, the roles of PKM gene and EPHA2 pathway in…
Digital RNA sequencing using unique molecular identifiers enables ultrasensitive RNA mutation analysis
Understanding genetic mutations is crucial for various applications, from diagnosing diseases to unraveling the complexities…
KinPred-RNA – kinase activity inference and cancer type classification using machine learning on RNA-seq data
Kinases play a pivotal role in regulating various cellular processes by transferring phosphate groups from…