rnaCrosslinkOO – an object-oriented R package for the analysis of RNA structural data generated by RNA crosslinking experiments
RNA molecules stand as pivotal players, orchestrating a myriad of essential functions such as gene…
Browsing: Other Tools
The M2 pipeline – a novel tool for rapidly analyzing host metabolic profiles from rna-seq data
The innovative M2 pipeline strengthens the advanced metabolic modeling functionality of NIMML’s TITAN-X precision medicine platform…
DEBFold – computational identification of rna secondary structures for sequences across structural families using deep learning
RNA molecules are emerging as key players in cellular processes, going beyond their traditional role…
MapUTR – identifies rare functional 3′ UTR variants regulating mRNA abundance of cancer driver genes
Understanding the function of rare non-coding variants has long been a daunting task. These elusive…
mAFiA – detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data
Unraveling the mysteries of RNA has always been a challenging task, but recent advancements in…
Improved RNA stability estimation through Bayesian modeling reveals insights into RNA decay rates
Gene expression, the process by which information encoded in DNA is translated into functional molecules…
BulkECexplorer compiles endothelial bulk transcriptomes to predict functional versus leaky transcription
Understanding the molecular activity of different cell types is essential for unraveling the mysteries of…
SegPore – raw signal segmentation for estimating RNA modifications and structures from Nanopore direct RNA sequencing data
Estimating RNA modifications from Nanopore direct RNA sequencing data is an important task for the…
ScRAT – phenotype prediction from single-cell RNA-seq data using attention-based neural networks
Understanding the cellular basis of disease phenotypes is crucial for developing targeted therapies. Traditional bulk…
LR Hunting – a random forest based cell–cell interaction discovery method for single-cell gene expression data
Cell-cell interactions (CCIs) and communication (CCC) play vital roles in orchestrating complex biological systems. Understanding…