biVI – biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data
Understanding how genes are expressed in individual cells is key to unlocking the mysteries of…
Browsing: Other Tools
sCIRCLE – an interactive visual exploration tool for single cell RNA-Seq data
A research team from HIRI and THWS develops a tool for visualizing single-cell data Modern…
dRNASb – a systems biology approach to decipher dynamics of host-pathogen interactions using temporal dual RNA-seq data
When our body gets infected, a complex battle ensues between our immune system and the…
SwitchFinder – a systematic search for RNA structural switches across the human transcriptome
RNA structural switches play crucial roles in regulating gene expression, particularly in bacteria, but their…
Exploring functional conservation in silico: a new machine learning approach to RNA-editing
About 50 years ago, the field of molecular biology began to uncover the mechanisms behind…
PARE – a framework for removal of confounding effects from any distance-based dimension reduction method
Imagine you have a complex dataset with lots of dimensions, like a massive library of…
Splice_sim – a nucleotide conversion-enabled RNA-seq simulation and evaluation framework
RNA plays a crucial role in all living cells, acting as a messenger that carries…
SinglePointRNA – a user-friendly application implementing single cell RNA-seq analysis software
Single-cell RNA sequencing (scRNA-seq) is a groundbreaking technique that allows scientists to explore gene expression…
M&M – an RNA-seq based pan-cancer classifier for pediatric tumors
Accurate diagnosis of rare tumors is a critical yet challenging task in pediatric oncology. Correctly…
CACIMAR – cross-species analysis of cell identities, markers, regulations, and interactions using single-cell RNA sequencing data
In the quest to understand gene regulation and cellular functions across different species, scientists have…