SwitchFinder – a systematic search for RNA structural switches across the human transcriptome
RNA structural switches play crucial roles in regulating gene expression, particularly in bacteria, but their…
Browsing: Other Tools
Exploring functional conservation in silico: a new machine learning approach to RNA-editing
About 50 years ago, the field of molecular biology began to uncover the mechanisms behind…
PARE – a framework for removal of confounding effects from any distance-based dimension reduction method
Imagine you have a complex dataset with lots of dimensions, like a massive library of…
Splice_sim – a nucleotide conversion-enabled RNA-seq simulation and evaluation framework
RNA plays a crucial role in all living cells, acting as a messenger that carries…
SinglePointRNA – a user-friendly application implementing single cell RNA-seq analysis software
Single-cell RNA sequencing (scRNA-seq) is a groundbreaking technique that allows scientists to explore gene expression…
M&M – an RNA-seq based pan-cancer classifier for pediatric tumors
Accurate diagnosis of rare tumors is a critical yet challenging task in pediatric oncology. Correctly…
CACIMAR – cross-species analysis of cell identities, markers, regulations, and interactions using single-cell RNA sequencing data
In the quest to understand gene regulation and cellular functions across different species, scientists have…
ELASTomics – high-throughput mechanical phenotyping and transcriptomics of single cells
Understanding how cells work at a fundamental level is crucial for advancing medical and biological…
GRouNdGAN – GRN-guided simulation of single-cell RNA-seq data using causal generative adversarial networks
In the world of biology, understanding how genes are regulated and how they interact within…
CASi – a framework for cross-timepoint analysis of single-cell RNA sequencing data
Single-cell RNA sequencing (scRNA-seq) technology has emerged as a powerful tool, allowing scientists to peer…