Replicability of bulk RNA-Seq differential expression and enrichment analysis results for small cohort sizes
Researchers at the University of Bern explored a common issue in RNA sequencing (RNA-Seq) research—how…
Browsing: Other Tools
miRglmm – a generalized linear mixed model of isomiR-level counts
MicroRNAs (miRNAs) are small but powerful molecules that play a crucial role in regulating gene…
adverSCarial – assessing the vulnerability of single-cell RNA-sequencing classifiers to adversarial attacks
Single-cell RNA sequencing (scRNA-seq) has become a powerful tool for analyzing gene expression at the…
RIBOSS detects novel translational events by combining long- and short-read transcriptome and translatome profiling
In the world of molecular biology, a lot happens between DNA and proteins. A key…
New machine learning tool enhances cancer detection in single-cell RNA sequencing
Cancer is a complex disease, and even within a single tumor, not all cells are…
LocusMasterTE – integrating long-read RNA sequencing improves locus-specific quantification of transposable element expression
Transposable elements (TEs), often called “jumping genes,” are mobile DNA sequences that can relocate within…
scPAS – single-cell phenotype-associated subpopulation identifier
Recent advancements in single-cell sequencing have allowed scientists to explore the complexity of tissues by…
SurfR – identifying surface protein coding genes from expression data
Cell-surface proteins play a crucial role in how cells communicate with each other and interact…
Unraveling RNA sequencing challenges: a new approach to understanding nascent and mature mRNA
RNA sequencing (RNA-seq) has revolutionized our ability to study gene expression by providing detailed snapshots…
Pantry – multimodal analysis of RNA sequencing data from populations for genomic interpretation
RNA sequencing (RNA-seq) is an invaluable tool for studying how genes are regulated in the…