M&M – an RNA-seq based pan-cancer classifier for pediatric tumors
Accurate diagnosis of rare tumors is a critical yet challenging task in pediatric oncology. Correctly…
Browsing: Analysis Pipelines
CHEUI – prediction of m6A and m5C at single-molecule resolution
RNA has long been regarded as the messenger that carries genetic instructions from DNA to…
CASi – a framework for cross-timepoint analysis of single-cell RNA sequencing data
Single-cell RNA sequencing (scRNA-seq) technology has emerged as a powerful tool, allowing scientists to peer…
scBFP – single-cell RNA sequencing data imputation using bi-level feature propagation
Scientists have long grappled with the challenge of deciphering gene expression profiles at the single-cell…
scRANK – ranking of cell clusters in a single-cell RNA-sequencing analysis framework using prior knowledge
Prioritization or ranking of different cell types in a single-cell RNA sequencing (scRNA-seq) framework can…
rnaCrosslinkOO – an object-oriented R package for the analysis of RNA structural data generated by RNA crosslinking experiments
RNA molecules stand as pivotal players, orchestrating a myriad of essential functions such as gene…
A new tool for plant long non-coding RNA identification
Long non-coding RNAs (lncRNAs) are ubiquitous transcripts with crucial regulatory roles in various biological processes,…
scTPC – a novel semi-supervised deep clustering model for scRNA-seq data
Single-cell RNA sequencing (scRNA-seq) is a powerful tool, unlocking the secrets of cellular heterogeneity, trajectory…
scLENS – data-driven signal detection for unbiased scRNA-seq data analysis
Where the complexity of biological data meets the challenges of noise and high dimensionality, researchers…
The M2 pipeline – a novel tool for rapidly analyzing host metabolic profiles from rna-seq data
The innovative M2 pipeline strengthens the advanced metabolic modeling functionality of NIMML’s TITAN-X precision medicine platform…