Rp3 – Ribosome profiling-assisted proteogenomics improves coverage and confidence in Ribo-Seq
Scientists have long believed that the human genome—the complete set of DNA in our bodies—contained…
Browsing: Analysis Pipelines
SeuratExtend: streamlining single-cell rna-seq analysis through an integrated and intuitive framework
Single-cell RNA sequencing (scRNA-seq) has transformed the way scientists study individual cells, allowing for a…
scDiffCoAM – A complete framework to identify potential cancer biomarkers
Single-cell RNA sequencing (scRNA-Seq) technology is a powerful tool that allows scientists to examine the…
CPA-Perturb-seq – multiplexed single-cell characterization of alternative polyadenylation regulators
Introduction to Polyadenylation Polyadenylation is a critical process that occurs at the end of a…
M&M – an RNA-seq based pan-cancer classifier for pediatric tumors
Accurate diagnosis of rare tumors is a critical yet challenging task in pediatric oncology. Correctly…
CHEUI – prediction of m6A and m5C at single-molecule resolution
RNA has long been regarded as the messenger that carries genetic instructions from DNA to…
CASi – a framework for cross-timepoint analysis of single-cell RNA sequencing data
Single-cell RNA sequencing (scRNA-seq) technology has emerged as a powerful tool, allowing scientists to peer…
scBFP – single-cell RNA sequencing data imputation using bi-level feature propagation
Scientists have long grappled with the challenge of deciphering gene expression profiles at the single-cell…
scRANK – ranking of cell clusters in a single-cell RNA-sequencing analysis framework using prior knowledge
Prioritization or ranking of different cell types in a single-cell RNA sequencing (scRNA-seq) framework can…
rnaCrosslinkOO – an object-oriented R package for the analysis of RNA structural data generated by RNA crosslinking experiments
RNA molecules stand as pivotal players, orchestrating a myriad of essential functions such as gene…