FedPyDESeq2 – a federated framework for bulk RNA-seq differential expression analysis
RNA sequencing (RNA-seq) has opened up new frontiers in understanding gene activity and its role…
Browsing: Analysis Pipelines
CellTran – a statistical approach for systematic identification of transition cells from scRNA-seq data
In multicellular organisms, cells go through complex transitions, changing from one type to another or…
Unraveling RNA sequencing challenges: a new approach to understanding nascent and mature mRNA
RNA sequencing (RNA-seq) has revolutionized our ability to study gene expression by providing detailed snapshots…
SoupLadle – label-free single-cell RNA multiplexing leveraging genetic variability
Single-cell RNA sequencing (scRNA-seq) is revolutionizing our understanding of human biology, especially in how cells…
Pantry – multimodal analysis of RNA sequencing data from populations for genomic interpretation
RNA sequencing (RNA-seq) is an invaluable tool for studying how genes are regulated in the…
WLGG – identifying cell types by lasso-constraint regularized Gaussian graphical model based on weighted distance penalty
Single-cell RNA sequencing (scRNA-seq) has become a powerful tool for exploring the diversity of cell…
ConDecon – clustering-independent estimation of cell abundances in bulk tissues using single-cell RNA-seq data
Understanding the complex world of cells within tissues has taken a leap forward with the…
scPair – Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlases
Multimodal single-cell assays are revolutionizing how we study biology by allowing researchers to analyze multiple…
ELATUS – uncovering functional lncRNAs by scRNA-seq
Long non-coding RNAs, or lncRNAs, are an important part of our genetic code, but they…
SPoTLIghT – integrating histopathology and transcriptomics for spatial tumor microenvironment profiling
Cancer research is increasingly focused on understanding the tumor microenvironment (TME) — the community of…