scRNAseq_KNIME workflow – a customizable, locally executable, interactive and automated KNIME workflow for single-cell RNA seq
Single-cell RNA sequencing (scRNA-seq) is nowadays widely used to measure gene expression in individual cells,…
Browsing: Analysis Pipelines
Researchers produce first-ever toolkit for RNA sequencing analysis using a ‘pantranscriptome’
Analyzing a person’s gene expression requires mapping their RNA landscape to a standard reference to…
INTERSTELLAR – A universal sequencing read interpreter
Massively parallel DNA sequencing has led to the rapid growth of highly multiplexed experiments in…
bulkAnalyseR – an accessible, interactive pipeline for analysing and sharing bulk multi-modal sequencing data
Bulk sequencing experiments (single- and multi-omics) are essential for exploring wide-ranging biological questions. To facilitate…
CaRPool-seq – combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq
Pooled CRISPR screens coupled with single-cell RNA-sequencing have enabled systematic interrogation of gene function and…
ParslRNA-Seq – an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression
RNA sequencing has become an increasingly affordable way to profile gene expression analyses. Researchers from…
WASP – a versatile, web-accessible single cell RNA-Seq processing platform
The technology of single cell RNA sequencing (scRNA-seq) has gained massively in popularity as it…
A lineage tree-based hidden Markov model quantifies cellular heterogeneity and plasticity
Individual cells can assume a variety of molecular and phenotypic states and recent studies indicate…
Bulk2Space – de novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution
Uncovering the tissue molecular architecture at single-cell resolution could help better understand organisms’ biological and…
miRPipe – a unified computational framework for a robust, reliable, and reproducible identification of novel miRNAs from RNA sequencing data
In eukaryotic cells, miRNAs regulate a plethora of cellular functionalities ranging from cellular metabolisms, and…