RNAlysis – analyze your RNA sequencing data without writing a single line of code
Amongst the major challenges in next-generation sequencing experiments are exploratory data analysis, interpreting trends, identifying…
Browsing: Analysis Pipelines
vAMPirus – a versatile amplicon processing and analysis program for studying viruses
Amplicon sequencing is an effective and increasingly applied method for studying viral communities in the…
Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data
Effective dimension reduction is essential for single cell RNA-seq (scRNAseq) analysis. Principal component analysis (PCA)…
A new sequencing technique achieves high-quality results from small volumes of frozen tumor specimens archived in biobanks
Columbia researchers invent a technique to study cancer tissues archived in biobanks, increasing the number…
scRNAseq_KNIME workflow – a customizable, locally executable, interactive and automated KNIME workflow for single-cell RNA seq
Single-cell RNA sequencing (scRNA-seq) is nowadays widely used to measure gene expression in individual cells,…
Researchers produce first-ever toolkit for RNA sequencing analysis using a ‘pantranscriptome’
Analyzing a person’s gene expression requires mapping their RNA landscape to a standard reference to…
INTERSTELLAR – A universal sequencing read interpreter
Massively parallel DNA sequencing has led to the rapid growth of highly multiplexed experiments in…
bulkAnalyseR – an accessible, interactive pipeline for analysing and sharing bulk multi-modal sequencing data
Bulk sequencing experiments (single- and multi-omics) are essential for exploring wide-ranging biological questions. To facilitate…
CaRPool-seq – combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq
Pooled CRISPR screens coupled with single-cell RNA-sequencing have enabled systematic interrogation of gene function and…
ParslRNA-Seq – an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression
RNA sequencing has become an increasingly affordable way to profile gene expression analyses. Researchers from…