Immunopipe – a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline
Understanding the human immune system at a cellular level has become increasingly important in fields…
Browsing: Analysis Pipelines
scRDEN – single-cell dynamic gene rank differential expression network and robust trajectory inference
Understanding how a single cell matures and takes on a specific role in the body…
Replicability of bulk RNA-Seq differential expression and enrichment analysis results for small cohort sizes
Researchers at the University of Bern explored a common issue in RNA sequencing (RNA-Seq) research—how…
miRglmm – a generalized linear mixed model of isomiR-level counts
MicroRNAs (miRNAs) are small but powerful molecules that play a crucial role in regulating gene…
MammOnc-DB – an integrative breast cancer data analysis platform for target discovery
Breast cancer is not just one disease—it’s a collection of different types with varying molecular…
RIBOSS detects novel translational events by combining long- and short-read transcriptome and translatome profiling
In the world of molecular biology, a lot happens between DNA and proteins. A key…
scTrans – sparse attention powers fast and accurate cell type annotation in single-cell RNA-seq data
Understanding the complex mix of cell types in tissues is a major challenge in biology,…
CoupleVAE – coupled variational autoencoders for predicting perturbational single-cell RNA sequencing data
As single-cell RNA sequencing becomes more advanced, scientists are now able to analyze the genetic…
A realistic FastQ-based framework – FastQDesign for scRNA-seq study design issues
Single-cell RNA sequencing (scRNA-seq) has revolutionized the way scientists study gene expression at the individual…
New machine learning tool enhances cancer detection in single-cell RNA sequencing
Cancer is a complex disease, and even within a single tumor, not all cells are…