As single-cell RNA sequencing experiments continue to advance scientific discoveries across biological disciplines, an increasing number of analysis tools and workflows for analyzing the data have been developed. In this chapter, University of Florida researchers describe a standard workflow and elaborate on relevant data analysis tools for analyzing single-cell RNA sequencing data. They provide recommendations for the appropriate use of commonly used methods, with code examples and analysis interpretations.
Dong X, Bacher R. (2023) Analysis of Single-Cell RNA-seq Data. Methods Mol Biol 2629:95-114. [abstract]