Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data
Although an essential step, cell functional annotation often proves particularly challenging from single-cell transcriptional data.…
Browsing: Pathway Analysis
IReNA – Integrated regulatory network analysis of single-cell transcriptomes and chromatin accessibility profiles
Recently, single-cell RNA sequencing (scRNA-seq) and single-cell assay for transposase-accessible chromatin using sequencing (scATAC-seq) have…
BoT-Net – a lightweight bag of tricks-based neural network for efficient LncRNA–miRNA interaction prediction
Interactions of long non-coding ribonucleic acids (lncRNAs) with micro-ribonucleic acids (miRNAs) play an essential role…
CLIPreg – Constructing translational regulatory networks from CLIP-, Ribo- and RNA-seq
The creation and analysis of gene regulatory networks have been the focus of bioinformatics research…
SPIRAL – Significant Process InfeRence ALgorithm for single cell RNA-sequencing and spatial transcriptomics
Gene expression data is complex and may hold information regarding multiple biological processes at once.…